Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF549_chr19_57522356_57545876	0/0	c0007	1923	2	2	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0008	1923	2	0	0	0	0	2	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0009	1923	2	0	0	2	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0010	1923	2	0	0	2	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0011	1923	1	0	1	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0012	1923	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0013	1923	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0014	1923	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0015	1923	1	0	0	0	0	1	copy fasta	ZNF549	chr19	57522356	57545876
ZNF550_chr19_57536838_57564863	0/1	c0001	1269	150	34	29	71	1	14	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0002	1269	102	29	9	45	6	13	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	1/0	c0003	1269	96	7	24	47	6	11	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0004	1269	43	9	13	12	3	6	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0005	1269	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0006	1269	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0007	1269	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0008	1269	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0009	1269	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0010	1269	1	0	1	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0011	1269	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0012	1269	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0013	1269	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0014	1269	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0015	1269	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0016	1269	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0017	1269	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	c0018	1269	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF551_chr19_57676977_57695648	1/1	c0001	2013	358	69	73	157	16	41	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0002	2013	33	1	4	27	0	1	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0003	2013	12	0	0	10	0	2	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0004	2013	10	9	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0005	2013	7	0	0	7	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0006	2013	6	6	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0007	2013	2	2	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0008	2013	2	2	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0009	2013	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0010	2013	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0011	2013	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0012	2013	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0013	2013	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0014	2013	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0015	2013	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0016	2013	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0017	2013	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	c0018	2013	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF552_chr19_57802082_57819913	1/1	c0001	1224	394	88	76	165	17	46	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0002	1224	27	0	5	22	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0003	1224	3	3	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0004	1224	3	0	0	0	1	2	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	c0005	1224	2	2	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913