Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF559_chr19_9319179_9350871	0/0	c0013	1617	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0014	1617	1	0	1	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0015	1617	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0016	1617	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	c0017	1617	1	0	0	1	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF560_chr19_9461355_9503616	1/1	c0001	2373	377	80	72	167	16	40	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0002	2373	12	12	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0003	2373	8	0	0	8	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0004	2373	2	0	2	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0005	2373	2	2	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0006	2373	1	0	1	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0007	2373	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0008	2373	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0009	2373	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0010	2373	1	0	1	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0011	2373	1	0	0	1	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0012	2373	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0013	2373	1	0	0	0	0	1	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	c0014	2373	1	0	0	0	0	1	copy fasta	ZNF560	chr19	9461355	9503616
ZNF561_chr19_9602329_9626232	1/1	c0001	1461	272	43	35	143	11	38	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0002	1461	93	45	30	8	3	7	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0003	1461	6	0	1	5	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0004	1461	6	6	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0005	1461	2	0	0	2	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0006	1461	2	2	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0007	1461	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0008	1461	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0009	1461	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0010	1461	1	0	0	0	0	1	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	c0011	1461	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF562_chr19_9636807_9680100	1/1	c0001	1281	286	95	62	85	10	32	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	c0002	1281	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	c0003	1281	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	c0004	1281	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	c0005	1281	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF563_chr19_12312477_12338633	1/1	c0001	1431	359	87	72	149	12	37	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0002	1431	3	0	0	3	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0003	1431	1	0	1	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0004	1431	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0005	1431	1	1	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0006	1431	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0007	1431	1	0	1	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	c0008	1431	1	0	0	0	0	1	copy fasta	ZNF563	chr19	12312477	12338633
ZNF564_chr19_12520373_12556482	1/1	c0001	1662	405	96	73	178	12	44	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	c0002	1662	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	c0003	1662	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	c0004	1662	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	c0005	1662	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	c0006	1662	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	c0007	1662	1	0	1	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482