JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTBD3_chr20_11912893_11931595	0/0	c0008	1569	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0009	1569	1	0	1	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0010	1589	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD6_chr14_105243533_105256093	1/1	c0001	1617	183	39	42	79	7	14	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0002	1617	40	3	9	16	6	6	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0003	1617	30	22	0	5	0	3	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0004	1617	7	6	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0005	1617	6	0	3	0	1	2	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0006	1617	5	4	1	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0007	1617	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0008	1617	1	0	0	0	0	1	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0009	1617	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0012	1617	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD6_chr14_105243533_105256093	0/0	c0013	1617	1	1	0	0	0	0	copy fasta	BTBD6	chr14	105243533	105256093
BTBD7_chr14_93232550_93338036	0/0	c0001	3399	338	78	68	153	14	25	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/1	c0002	3399	25	13	1	6	1	3	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0003	3399	4	0	0	4	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0004	3399	1	0	0	0	0	1	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0005	3399	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0006	3399	1	0	1	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0007	3399	1	0	0	0	0	1	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0008	3399	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0009	3399	1	1	0	0	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0010	3399	1	0	0	1	0	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD7_chr14_93232550_93338036	0/0	c0011	3399	1	0	0	0	1	0	copy fasta	BTBD7	chr14	93232550	93338036
BTBD8_chr1_92075345_92189723	0/0	c0001	5379	75	23	15	19	4	14	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0002	5379	30	1	11	8	3	7	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0003	5379	19	18	1	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0004	5379	8	7	1	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0005	5379	5	5	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/1	c0006	5379	5	1	2	0	0	1	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0007	5379	4	4	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0008	5379	2	2	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0009	5379	2	2	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0010	5379	2	2	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0011	5379	2	0	0	1	1	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0012	5379	1	1	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	1/0	c0013	5379	1	0	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0014	5379	1	1	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD8_chr1_92075345_92189723	0/0	c0015	5379	1	1	0	0	0	0	copy fasta	BTBD8	chr1	92075345	92189723
BTBD9_chr6_38163451_38644929	1/1	c0001	1839	222	66	48	74	10	22	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	c0002	1839	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTBD9_chr6_38163451_38644929	0/0	c0003	1839	1	1	0	0	0	0	copy fasta	BTBD9	chr6	38163451	38644929
BTC_chr4_74739759_74799523	1/0	c0001	537	234	28	45	131	8	21	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	c0002	537	57	31	8	11	0	7	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/1	c0003	537	36	7	14	5	2	7	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	c0004	537	22	12	3	0	2	5	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	c0005	537	9	7	2	0	0	0	copy fasta	BTC	chr4	74739759	74799523