Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF564_chr19_12520373_12556482	0/0	c0008	1659	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF565_chr19_36177276_36219665	0/0	c0001	1500	216	66	41	82	13	14	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	1/1	c0002	1500	126	16	31	53	5	19	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0003	1500	23	0	0	23	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0004	1500	12	12	0	0	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0005	1500	3	0	0	3	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0006	1500	2	0	2	0	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0007	1500	1	1	0	0	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0008	1500	1	0	0	1	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0009	1500	1	0	0	0	0	1	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	c0010	1500	1	1	0	0	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF566_chr19_36440119_36494561	1/0	c0001	1257	132	26	27	55	6	17	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/1	c0002	1257	130	47	30	27	4	21	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	c0003	1257	35	7	3	23	0	2	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	c0004	1257	2	2	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	c0005	1257	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	c0007	1257	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF567_chr19_36682612_36726336	0/1	c0001	1944	164	32	36	73	6	16	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0002	1944	98	32	17	40	3	6	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	1/0	c0003	1944	84	22	16	27	5	13	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0004	1944	17	1	11	0	2	3	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0005	1944	8	0	0	8	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0006	1944	8	0	0	7	0	1	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0007	1944	3	0	0	0	0	3	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0008	1944	2	0	2	0	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0009	1944	1	1	0	0	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	c0010	1944	1	0	0	1	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF568_chr19_36911332_36957734	1/0	c0001	1935	127	20	25	60	8	13	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/1	c0002	1935	93	28	31	20	4	9	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0003	1935	87	19	7	46	2	13	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0004	1935	10	0	4	5	0	1	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0005	1935	9	9	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0006	1935	7	7	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0007	1935	5	3	2	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0008	1935	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0009	1935	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0010	1935	1	0	1	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0011	1935	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0012	1935	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0013	1935	1	0	1	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0014	1935	1	0	1	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	c0015	1935	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF569_chr19_37406157_37472444	1/1	c0001	2061	369	82	65	172	12	36	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	c0002	2061	1	0	0	1	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	c0003	2061	1	1	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	c0004	2061	1	1	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	c0005	2061	1	0	0	1	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	c0006	2061	1	0	1	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF570_chr19_37464356_37493652	1/1	c0001	1611	362	74	63	166	14	43	copy fasta	ZNF570	chr19	37464356	37493652