Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF570_chr19_37464356_37493652	0/0	c0002	1611	7	7	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	c0003	1611	4	3	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	c0004	1611	4	0	0	3	0	1	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	c0005	1611	2	2	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	c0006	1611	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF571_chr19_37559260_37599792	1/0	c0001	1830	149	43	33	54	7	11	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0002	1830	107	20	10	69	1	7	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/1	c0003	1830	48	6	19	11	2	9	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0004	1830	11	0	6	4	0	1	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0005	1830	6	6	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0006	1830	4	2	2	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0007	1830	2	0	0	0	0	2	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0008	1830	2	2	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0009	1830	2	1	1	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0010	1830	2	0	0	2	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0011	1830	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0012	1830	1	0	1	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0013	1830	1	0	0	0	1	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0014	1830	1	0	0	0	1	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0015	1830	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0016	1830	1	0	0	1	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0017	1830	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0018	1830	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	c0019	1830	1	0	0	1	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF572_chr8_124968295_124984389	1/0	c0001	1590	258	49	42	127	10	29	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0002	1590	79	16	15	40	0	8	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0003	1590	14	13	1	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0004	1590	14	10	0	3	0	1	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0005	1590	7	0	0	7	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0006	1590	4	2	2	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/1	c0007	1590	3	0	2	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0008	1590	2	2	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0009	1590	2	0	0	2	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0010	1590	1	1	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0011	1590	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0012	1590	1	1	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0013	1590	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	c0014	1590	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF573_chr19_37733302_37784586	0/1	c0001	1998	211	81	46	57	10	16	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	1/0	c0002	1998	86	1	10	64	1	9	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0003	1998	25	3	10	9	1	2	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0004	1998	8	0	2	0	1	5	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0005	1998	7	0	0	7	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0006	1998	4	2	2	0	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0007	1998	3	0	0	3	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0008	1998	2	0	1	0	1	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0009	1998	1	1	0	0	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0010	1998	1	0	0	1	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0011	1998	1	0	1	0	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	c0012	1998	1	0	0	1	0	0	copy fasta	ZNF573	chr19	37733302	37784586