Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF577_chr19_51862048_51892951	0/0	c0024	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0025	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	c0026	1458	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF578_chr19_52448553_52521882	0/0	c0001	1773	113	9	26	64	1	13	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/1	c0002	1773	112	44	22	23	5	17	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	1/0	c0003	1773	77	0	20	42	4	10	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0004	1773	18	15	3	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0005	1773	10	0	0	10	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0006	1773	9	9	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0007	1773	7	6	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0008	1773	4	0	0	4	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0009	1773	2	2	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0010	1773	2	2	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0011	1773	2	0	0	2	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0012	1773	2	2	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0013	1773	2	0	0	2	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0014	1773	2	2	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0015	1773	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0016	1773	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0017	1773	1	0	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0018	1773	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0019	1773	1	0	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0020	1773	1	0	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0021	1773	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0022	1773	1	0	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0023	1773	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	c0024	1773	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF579_chr19_55571774_55585848	1/0	c0001	1689	104	8	16	64	7	8	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/1	c0002	1692	54	15	18	5	2	13	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0003	1692	45	5	12	23	0	5	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0004	1690	45	3	8	29	2	3	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0005	1693	21	0	10	4	1	6	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0006	1692	20	18	1	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0007	1692	15	10	5	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0008	1693	14	1	7	5	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0009	1692	10	9	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0010	1693	9	5	1	1	0	2	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0011	1689	7	1	3	3	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0012	1693	6	6	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0013	1689	6	0	0	6	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0014	1694	5	0	0	5	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0015	1693	4	0	1	2	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0016	1691	4	0	1	3	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0017	1690	4	0	0	4	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0018	1693	3	3	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0019	1693	3	1	1	0	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0020	1690	3	0	1	1	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0021	1690	2	0	0	0	0	2	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0022	1692	2	2	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0023	1694	2	1	0	0	0	1	copy fasta	ZNF579	chr19	55571774	55585848