Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF579_chr19_55571774_55585848	0/0	c0024	1693	2	2	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0025	1691	2	0	0	1	1	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0026	1690	2	0	1	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0027	1690	2	0	1	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0028	1716	1	0	0	0	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0029	1693	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0030	1692	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0031	1695	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0032	1694	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0033	1693	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0034	1693	1	0	0	0	1	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0035	1692	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0036	1693	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0037	1694	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0038	1693	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0039	1692	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0040	1690	1	0	0	0	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0041	1692	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0042	1690	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0043	1690	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0044	1692	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0045	1691	1	0	1	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0046	1690	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	c0047	1689	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF57_chr19_2895928_2923473	0/0	c0001	1668	155	20	29	84	9	13	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/1	c0002	1668	85	26	28	15	6	9	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	1/0	c0003	1668	74	20	7	39	0	7	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0004	1668	37	0	4	22	0	11	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0005	1668	13	13	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0006	1668	9	9	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0007	1668	6	0	1	0	1	4	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0008	1668	3	1	1	0	0	1	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0009	1668	3	3	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0010	1668	2	0	0	2	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0011	1668	2	1	1	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0012	1668	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0013	1668	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0014	1668	1	0	0	0	0	1	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0015	1668	1	0	1	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0016	1668	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0017	1668	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0018	1668	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0019	1668	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	c0020	1665	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF580_chr19_55636002_55648470	1/1	c0001	519	309	71	72	114	12	38	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	c0002	519	80	16	15	35	2	12	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	c0003	519	4	4	0	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	c0004	519	1	0	0	1	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	c0005	519	1	1	0	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	c0006	519	1	0	1	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470