Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF585B_chr19_37176579_37215536	0/0	c0008	2310	2	2	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0009	2310	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0010	2310	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0011	2310	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0012	2310	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0013	2310	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0014	2310	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0015	2310	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0016	2310	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0017	2310	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0018	2310	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	c0019	2310	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF586_chr19_57764676_57785616	1/1	c0001	1209	394	78	80	174	16	44	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	c0002	1209	14	14	0	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	c0003	1209	1	0	1	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	c0004	328	1	0	1	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF587B_chr19_57825299_57851238	0/1	c0001	1902	197	50	35	93	6	12	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0002	1902	134	27	25	58	6	18	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0003	1902	45	0	4	29	1	11	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0004	1902	20	10	0	10	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	1/0	c0005	1902	14	0	7	1	0	5	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0006	1902	8	0	7	0	1	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0007	1902	3	3	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0008	1902	2	0	0	0	2	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0009	1902	2	0	0	2	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0010	1902	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0011	1902	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0012	1902	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0013	1902	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0014	1902	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0015	1902	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	c0016	1902	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587_chr19_57844859_57870117	1/0	c0001	1728	187	25	37	90	7	27	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/1	c0002	1728	179	18	35	107	5	13	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0003	1728	17	6	0	11	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0004	1728	13	13	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0005	1728	12	12	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0006	1728	7	0	4	0	2	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0007	1728	7	7	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0008	1728	6	0	4	1	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0009	1728	4	3	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0010	1728	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0011	1728	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0012	1728	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0013	1728	2	1	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0014	1728	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0015	1728	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0016	1728	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0017	1728	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	c0018	1728	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117