Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF594_chr17_5174535_5196868	0/0	c0007	2424	5	5	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0008	2424	4	4	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0009	2424	4	0	0	4	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0010	1845	3	3	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0011	2424	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0012	2424	2	0	0	0	1	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0013	2421	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0014	2421	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0015	2424	2	0	0	2	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0016	2424	2	1	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0017	2424	2	0	0	2	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0018	2424	2	0	0	0	0	2	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0019	2424	2	0	2	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0020	2424	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0021	2424	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0022	2424	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0023	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0024	2424	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0025	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0026	2424	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0027	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0028	2424	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0029	2424	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0030	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0031	2424	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0032	2424	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0033	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0034	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0035	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0036	2424	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0037	2421	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0038	2424	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	c0039	2424	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF595_chr4_48321_93208	1/1	c0001	1947	170	36	37	72	7	16	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0002	1947	56	0	16	26	3	11	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0003	1947	16	4	2	6	0	4	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0004	1947	16	12	2	0	0	2	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0005	1947	11	10	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0006	1947	7	0	3	0	0	4	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0007	1947	6	6	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0008	1947	5	4	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0009	1947	5	0	4	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0010	1947	3	3	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0011	1947	2	2	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0012	1947	2	0	1	0	0	1	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0013	1947	2	0	0	2	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0014	1947	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0015	1947	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0016	1947	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0017	1947	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208