Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF595_chr4_48321_93208	0/0	c0018	1947	1	0	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0019	1947	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	c0020	1947	1	1	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF596_chr8_227456_252339	1/1	c0001	1515	291	55	62	128	12	32	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0002	1515	52	2	10	32	1	7	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0003	1515	50	6	1	40	0	3	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0004	1515	25	15	4	0	1	5	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0005	1515	5	5	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0006	1515	5	4	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0007	1515	3	3	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0008	1515	3	3	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0009	1515	2	0	1	0	1	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0010	1515	1	1	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0011	1515	1	0	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0012	1515	1	0	0	0	0	1	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0013	1515	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0014	1515	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0015	1515	1	0	0	0	1	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0016	1515	1	0	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	c0017	1515	1	0	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF597_chr16_3427414_3448504	1/0	c0001	1275	185	76	31	54	5	18	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/1	c0002	1275	185	12	43	100	11	18	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0003	1275	16	0	0	12	0	4	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0004	1275	9	8	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0005	1275	4	0	0	4	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0006	1275	3	0	0	3	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0007	1275	2	2	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0008	1275	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0009	1275	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0010	1275	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0011	1275	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0012	1275	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	c0013	1275	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF599_chr19_34753073_34778215	1/1	c0001	1767	393	56	64	215	18	38	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0002	1767	9	8	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0003	1767	9	8	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0004	1767	5	5	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0005	1767	2	0	2	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0006	1767	2	2	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0007	1767	2	0	0	0	0	2	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0008	1767	2	2	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0009	1767	1	1	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0010	1767	1	0	0	1	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0011	1767	1	0	0	1	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0012	1767	1	0	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0013	1767	1	0	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	c0014	1767	1	0	0	1	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF600_chr19_52759184_52791791	0/1	c0001	2376	165	32	49	49	10	24	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	1/0	c0002	2376	113	0	13	83	4	12	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0003	2376	41	0	3	38	0	0	copy fasta	ZNF600	chr19	52759184	52791791