JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTC_chr4_74739759_74799523	0/0	c0006	537	1	0	0	1	0	0	copy fasta	BTC	chr4	74739759	74799523
BTC_chr4_74739759_74799523	0/0	c0007	537	1	1	0	0	0	0	copy fasta	BTC	chr4	74739759	74799523
BTD_chr3_15596745_15658714	1/1	c0001	1572	305	88	55	122	6	32	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0002	1572	89	5	11	63	1	9	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0003	1572	3	0	1	0	0	2	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0004	1572	3	0	0	3	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0005	1572	3	2	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0006	1572	2	0	1	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0007	1572	2	0	0	2	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0008	1572	2	0	0	2	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0010	1572	1	0	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0013	1572	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0014	1572	1	0	0	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	c0015	1572	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTF3L4_chr1_52051295_52095716	1/1	c0001	477	276	92	48	94	10	30	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3_chr5_73493442_73510667	1/1	c0001	621	221	15	68	91	8	37	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	c0002	621	186	76	12	85	2	11	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	c0003	621	1	1	0	0	0	0	copy fasta	BTF3	chr5	73493442	73510667
BTG1_chr12_92135278_92150846	1/1	c0001	516	458	93	79	222	16	46	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	c0002	516	4	3	1	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	c0003	516	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	c0004	516	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG2_chr1_203300519_203314602	1/1	c0001	477	424	96	68	196	17	45	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	c0002	477	7	0	2	5	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	c0003	477	1	0	0	0	0	1	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	c0004	477	1	1	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	c0005	477	1	0	0	0	1	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	c0006	477	1	1	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	c0007	477	1	0	0	1	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG3_chr21_17588653_17617901	1/1	c0001	759	386	98	65	167	16	38	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	c0002	759	13	0	0	13	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	c0003	759	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	c0004	759	1	0	1	0	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	c0005	759	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG4_chr11_111489815_111517386	0/1	c0001	690	339	89	63	144	10	32	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	1/0	c0002	690	11	6	4	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	c0003	690	2	0	0	2	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	c0004	690	1	0	1	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	c0005	690	1	1	0	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTK_chrX_101344450_101391191	0/0	c0001	1980	170	64	21	64	2	19	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	1/1	c0002	1980	125	7	32	65	7	12	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	c0003	1980	5	4	1	0	0	0	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	c0004	1980	1	1	0	0	0	0	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	c0005	1980	1	0	0	0	0	1	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	c0006	1981	1	0	1	0	0	0	copy fasta	BTK	chrX	101344450	101391191
BTLA_chr3_112458966_112504472	0/1	c0001	870	187	16	45	96	6	23	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	c0002	870	125	64	11	39	0	11	copy fasta	BTLA	chr3	112458966	112504472