Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF600_chr19_52759184_52791791	0/0	c0004	2376	36	30	2	1	1	2	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0005	2376	25	1	5	10	1	8	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0006	2376	24	0	5	16	0	3	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0007	2376	14	0	0	14	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0008	2376	9	5	0	4	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0009	2376	8	7	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0010	2376	7	0	0	6	0	1	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0011	2376	6	5	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0012	2376	5	0	0	5	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0013	2376	4	0	0	4	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0014	2376	3	0	0	3	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0015	2376	3	3	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0016	2376	3	3	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0017	2376	2	1	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0018	2376	2	0	2	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0019	2376	2	2	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0020	2376	2	0	0	2	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0021	2376	2	0	0	0	2	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0022	2376	2	2	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0023	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0024	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0025	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0026	2376	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0027	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0028	2376	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0029	2376	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0030	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0031	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	c0032	2376	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF605_chr12_132913306_132961306	1/1	c0001	1926	113	33	29	31	8	10	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	c0002	1926	6	0	0	6	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	c0003	1926	3	3	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	c0004	1926	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	c0005	1926	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	c0006	1926	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	c0007	1926	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF606_chr19_57972076_58007820	1/1	c0001	2379	309	46	56	166	10	29	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0002	2379	48	19	7	15	3	4	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0003	2379	9	9	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0004	2379	8	0	7	0	1	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0005	2379	4	4	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0006	2379	3	3	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0007	2379	2	2	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0008	2379	1	0	0	0	0	1	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0009	2379	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0010	2379	1	0	1	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0011	2379	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0012	2379	1	0	1	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0013	2379	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	c0014	2379	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820