Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF607_chr19_37691371_37724761	0/1	c0001	2091	124	41	41	25	7	9	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0002	2091	105	23	10	59	1	12	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0003	2091	62	4	12	24	8	14	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0004	2091	22	0	5	16	0	1	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0005	2091	16	4	6	5	0	1	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0006	2091	9	9	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0007	2091	8	8	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	1/0	c0008	2091	5	0	0	3	0	1	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0009	2091	2	0	0	2	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0010	2091	2	0	0	0	0	2	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0011	2091	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0012	2091	1	1	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	c0013	2091	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF608_chr5_124631915_124751639	0/0	c0001	4539	133	37	24	53	3	16	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	1/0	c0002	4539	70	8	21	29	4	7	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0003	4539	51	15	9	23	0	4	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/1	c0004	4539	32	13	11	0	3	4	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0005	4539	9	9	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0006	4539	2	0	0	2	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0007	4539	2	0	0	0	0	2	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0008	4539	2	2	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0009	4539	1	0	0	0	0	1	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0010	4539	1	0	0	0	0	1	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0011	4539	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0012	4539	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0013	4539	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0014	4539	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0015	4539	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0016	4539	1	0	0	0	0	1	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	c0017	4539	1	0	1	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF609_chr15_64455578_64691068	0/1	c0001	4236	93	45	4	16	5	22	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0002	4236	42	30	10	0	1	1	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0003	4236	20	1	6	6	2	5	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	1/0	c0004	4236	6	5	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0005	4236	5	5	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0006	4236	2	2	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0007	4236	2	2	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0008	4236	2	0	2	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0009	4236	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0010	4236	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0011	4236	1	0	0	0	0	1	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	c0012	4236	1	0	0	0	0	1	copy fasta	ZNF609	chr15	64455578	64691068
ZNF610_chr19_52331243_52372778	0/1	c0001	1389	159	35	43	52	6	22	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0002	1389	118	27	18	50	7	16	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	1/0	c0003	1389	65	9	11	39	1	4	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0004	1389	17	0	3	14	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0005	1389	14	6	0	8	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0006	1389	9	0	0	9	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0007	1389	5	4	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	c0008	1389	4	2	0	1	0	1	copy fasta	ZNF610	chr19	52331243	52372778