Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF613_chr19_51922472_51951621	0/0	c0005	1854	4	0	3	1	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0006	1854	1	1	0	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0007	1854	1	1	0	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0008	1854	1	0	0	0	0	1	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	c0009	1854	1	0	1	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF614_chr19_52008324_52033379	1/1	c0001	1758	177	21	37	91	10	16	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0002	1758	69	3	5	43	6	12	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0003	1758	64	21	11	21	0	11	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0004	1758	40	0	6	34	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0005	1758	28	23	5	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0006	1758	17	11	4	2	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0007	1758	12	10	1	0	0	1	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0008	1758	3	0	3	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0009	1758	2	2	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0010	1758	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0011	1758	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0012	1758	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	c0013	1743	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF615_chr19_51986332_52013211	0/0	c0001	2229	196	31	38	98	10	19	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0002	2229	172	45	27	67	7	26	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0003	2229	7	7	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0004	2229	6	5	1	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0005	2229	4	1	2	0	1	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0006	2229	2	2	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0007	2229	2	2	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0008	2229	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0009	2229	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0010	2229	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0011	2229	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0012	2229	1	0	0	0	0	1	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0013	2229	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0014	2229	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0015	2229	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	c0016	2229	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF616_chr19_52108091_52144938	1/1	c0001	2346	196	19	37	94	14	30	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0002	2346	113	52	17	31	2	11	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0003	2346	37	1	13	20	1	2	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0004	2346	15	0	1	14	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0005	2346	13	0	0	13	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0006	2346	9	8	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0007	2346	8	0	3	4	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0008	2346	3	3	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0009	2346	3	3	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0010	2346	2	0	1	0	1	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0011	2346	2	2	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0012	2346	2	2	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0013	2346	2	2	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0014	2346	1	0	0	1	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0015	2346	1	0	0	1	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0016	2346	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938