Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF616_chr19_52108091_52144938	0/0	c0017	2346	1	0	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0018	2346	1	0	0	1	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0019	2346	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0020	2346	1	0	0	1	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0021	2346	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	c0022	2346	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF618_chr9_113871309_114061593	0/1	c0001	2865	78	2	11	52	6	6	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0002	2865	73	17	26	17	5	8	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	1/0	c0003	2865	29	6	3	18	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0004	2865	17	11	5	0	1	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0005	2865	14	11	3	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0006	2865	7	7	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0007	2865	7	0	0	7	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0008	2865	6	6	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0009	2865	4	4	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0010	2865	4	0	0	4	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0011	2865	4	2	0	2	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0012	2865	2	2	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0013	2865	2	2	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0014	2865	2	1	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0015	2865	1	0	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0016	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0017	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0018	2865	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0019	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0020	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0021	2865	1	0	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0022	2865	1	0	0	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0023	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0024	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0025	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0026	2865	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0027	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0028	2865	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	c0029	2865	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF619_chr3_40472122_40496053	1/1	c0001	1731	381	79	55	191	13	41	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0002	1731	24	14	4	4	1	1	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0003	1731	5	0	4	0	1	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0004	1731	2	0	1	0	1	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0005	1731	2	0	0	0	0	2	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0006	1731	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0007	1731	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0008	1731	1	0	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0009	1731	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0010	1731	1	0	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0011	1731	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0012	1731	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	c0013	1731	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF620_chr3_40501039_40523736	1/1	c0001	1269	326	78	53	151	12	30	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0002	1269	46	8	8	25	1	4	copy fasta	ZNF620	chr3	40501039	40523736