Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF620_chr3_40501039_40523736	0/0	c0003	1269	29	2	2	19	1	5	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0004	1269	2	0	2	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0005	1269	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0006	1269	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0007	1269	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0008	1269	1	0	0	0	0	1	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0009	1269	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0010	1269	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	c0011	1269	1	0	0	1	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF621_chr3_40519960_40544782	1/1	c0001	1320	328	86	64	128	15	33	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0002	1320	53	5	8	34	1	5	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0003	1320	11	0	1	8	0	2	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0004	1320	3	3	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0005	1320	2	1	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0006	1320	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0007	1320	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0008	1320	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0009	1320	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	c0010	1320	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF622_chr5_16446519_16470800	1/1	c0001	1434	382	85	69	180	14	32	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0002	1434	3	3	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0003	1434	3	0	0	3	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0004	1434	2	2	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0005	1434	1	1	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0006	1434	1	0	0	1	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0007	1434	1	1	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	c0008	1434	1	0	1	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF623_chr8_143631019_143658730	0/1	c0001	1491	236	40	46	107	12	30	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0002	1491	122	32	20	56	6	8	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0003	1491	13	13	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0004	1491	4	0	0	4	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0005	1491	2	0	1	0	0	1	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0006	1491	2	0	0	2	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0007	1491	2	1	0	0	0	1	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0008	1491	1	0	1	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0009	1491	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0010	1491	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	c0011	1491	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF624_chr17_16615734_16658850	0/0	c0001	2598	168	65	20	64	3	16	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	1/0	c0002	2598	144	23	33	68	2	17	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/1	c0003	2598	56	1	12	36	1	5	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0004	2598	4	1	1	0	2	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0005	2598	1	0	0	1	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0006	2598	1	0	0	1	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0007	2598	1	1	0	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0008	2598	1	0	1	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0009	2598	1	1	0	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	c0010	2598	1	0	1	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF625_chr19_12139890_12161734	1/1	c0001	1119	145	70	28	26	6	13	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	c0002	1119	134	0	33	73	6	22	copy fasta	ZNF625	chr19	12139890	12161734