Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF628_chr19_55471617_55489487	0/0	c0019	3181	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0020	3180	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0021	3180	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0022	3180	2	2	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0023	3180	2	2	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0024	3181	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0025	3181	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0026	3180	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0027	3181	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0028	3184	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0029	3184	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0030	3182	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0031	3182	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0032	3182	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0033	3181	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0034	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0035	3182	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0036	3183	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0037	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0038	3180	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0039	3183	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0040	3181	1	0	0	0	1	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0041	3182	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0042	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0043	3181	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0044	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0045	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0046	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0047	3180	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0048	3180	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0049	3180	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0050	3182	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0051	3181	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0052	3180	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0053	3180	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0054	3182	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0055	3182	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0056	3181	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0057	3181	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0058	3182	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0059	3182	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0060	3181	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0061	3182	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0062	3181	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0063	3181	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0064	3180	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0065	3180	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0066	3180	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0067	3180	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0068	3180	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487