Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF628_chr19_55471617_55489487	0/0	c0069	3180	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0070	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0071	3181	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0072	3181	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0073	3180	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0074	3180	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0075	3180	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0076	3180	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0077	3180	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0078	3180	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0079	3184	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0080	3182	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0081	3181	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0082	3185	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0083	3184	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0084	3183	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0085	3182	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	c0086	3182	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF629_chr16_30773456_30792205	1/1	c0001	2610	251	68	56	84	10	31	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0002	2610	12	0	6	6	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0003	2610	3	0	0	2	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0004	2610	3	3	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0005	2610	3	3	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0006	2610	2	1	1	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0007	2610	2	2	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0008	2610	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0009	2610	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0010	2610	1	0	0	0	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0011	2610	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0012	2610	1	0	1	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0013	2610	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0014	2610	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0015	2610	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0016	2610	1	0	0	0	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0017	2610	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0018	2610	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	c0019	2610	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF630_chrX_48052516_48076640	1/0	c0001	1974	178	37	25	94	4	17	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0002	1974	71	18	13	21	5	14	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/1	c0003	1974	7	0	4	0	1	1	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0004	1974	4	4	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0005	1974	3	3	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0006	1974	3	0	0	3	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0007	1974	2	2	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0008	1974	2	2	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0009	1974	2	2	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0010	1976	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0011	1974	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0012	1974	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0013	1974	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640