Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF630_chrX_48052516_48076640	0/0	c0014	1974	1	0	1	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0015	1974	1	0	1	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	c0016	1974	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF638_chr2_71326782_71440061	0/1	c0001	5937	106	10	27	46	4	18	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0002	5937	77	1	17	45	3	11	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	1/0	c0003	5937	59	35	14	0	3	6	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0004	5937	48	12	2	28	2	4	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0005	5937	13	12	1	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0006	5937	7	0	0	6	0	1	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0007	5937	6	6	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0008	5937	3	0	0	3	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0009	5937	2	0	2	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0010	5937	2	2	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0011	5937	2	0	0	2	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0012	5937	2	0	0	2	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0013	5937	2	2	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0014	5937	2	0	0	2	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0015	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0016	5937	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0017	5937	1	0	1	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0018	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0019	5937	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0020	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0021	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0022	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0023	5937	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0024	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0025	5937	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0026	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0027	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0028	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0029	5937	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0030	5937	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	c0031	5937	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF639_chr3_179318031_179343583	1/1	c0001	1458	345	66	66	168	11	32	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0002	1458	38	7	7	15	3	6	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0003	1458	20	16	3	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0004	1458	6	0	0	1	0	5	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0005	1458	2	2	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0006	1458	1	0	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0007	1458	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	c0008	1458	1	0	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF641_chr12_48332180_48355919	1/1	c0001	1275	369	84	62	182	11	28	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0002	1275	29	2	12	1	3	11	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0003	1275	3	1	0	2	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0004	1275	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0005	1275	1	0	0	0	0	1	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0006	1275	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0007	1275	1	0	1	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0008	1275	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919