JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTLA_chr3_112458966_112504472	0/0	c0003	870	18	3	4	11	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	1/0	c0004	870	13	10	0	2	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	c0005	870	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTN1A1_chr6_26495303_26515425	0/0	c0001	1581	223	54	35	96	7	31	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	1/1	c0002	1581	154	32	36	59	8	17	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0003	1581	16	3	5	7	1	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0004	1581	10	1	4	5	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0005	1581	3	3	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0006	1581	2	0	0	2	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0007	1581	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0008	1581	1	0	0	0	0	1	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0009	1581	1	0	0	0	0	1	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0010	1581	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0011	1581	1	0	0	1	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	c0012	1581	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN2A1_chr6_26452955_26474637	1/1	c0001	1584	247	27	55	122	14	27	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0002	1584	59	38	5	16	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0003	1584	53	9	3	34	0	7	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0004	1584	19	0	0	19	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0005	1584	9	7	2	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0006	1584	8	0	0	8	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0007	1584	8	2	5	0	1	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0008	1584	7	2	1	1	1	2	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0009	1587	5	5	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0010	1584	2	0	2	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0011	1584	1	1	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0012	1584	1	0	1	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	c0013	1584	1	1	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A2_chr6_26378108_26399874	0/0	c0001	1572	193	60	39	69	6	19	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	1/1	c0002	1572	149	14	29	77	5	22	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0003	1572	18	2	2	12	0	2	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0004	1572	7	7	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0005	1572	4	1	2	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0006	1572	3	3	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0007	1572	2	0	0	2	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0008	1572	2	0	1	0	1	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0009	1572	2	2	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0010	1572	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0011	1572	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0013	1572	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0014	1572	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0015	1572	1	0	0	1	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0016	1572	1	0	0	1	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0017	1572	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0018	1572	1	0	0	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	c0019	1572	1	0	0	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN3A1_chr6_26397275_26420208	1/1	c0001	1542	188	20	33	103	6	24	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0002	1542	70	48	6	14	0	2	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0003	1542	61	3	8	40	4	6	copy fasta	BTN3A1	chr6	26397275	26420208