Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF641_chr12_48332180_48355919	0/0	c0009	1275	1	0	1	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	c0010	1275	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF644_chr1_90910304_91027035	1/1	c0001	3984	283	61	61	115	12	32	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0002	3984	6	0	0	6	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0003	3984	5	0	2	0	2	1	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0004	3984	5	5	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0005	3984	3	3	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0006	3984	2	2	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0007	3984	2	0	0	1	0	1	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0008	3984	1	0	0	1	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0009	3984	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0010	3984	1	0	0	1	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0011	3984	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0012	3984	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0013	3984	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0014	3984	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	c0015	3984	1	0	1	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF646_chr16_31069422_31089196	0/0	c0001	5499	110	2	27	73	4	4	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0002	5499	83	14	18	24	5	22	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	1/1	c0003	5499	37	15	10	0	6	4	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0004	5499	30	28	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0005	5499	6	6	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0006	5499	5	0	0	5	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0007	5499	4	0	0	0	0	4	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0008	5499	4	3	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0009	5499	4	4	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0010	5499	3	0	0	3	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0011	5499	3	0	2	0	1	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0012	5499	2	0	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0013	5499	2	0	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0014	5499	2	2	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0015	5499	2	2	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0016	5499	2	0	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0017	5499	2	2	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0018	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0019	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0020	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0021	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0022	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0023	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0024	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0025	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0026	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0027	5499	1	0	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0028	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0029	5499	1	0	0	0	0	1	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0030	5499	1	0	0	0	1	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0031	5499	1	0	0	0	1	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0032	5499	1	0	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0033	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196