Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF646_chr16_31069422_31089196	0/0	c0034	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0035	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0036	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0037	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0038	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0039	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0040	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0041	5499	1	0	0	0	0	1	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0042	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0043	5499	1	0	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0044	5499	1	0	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0045	5499	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	c0046	5499	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF648_chr1_182049570_182066712	1/0	c0001	1707	254	67	54	101	5	26	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/1	c0002	1707	91	6	9	63	3	9	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0003	1707	4	4	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0004	1707	2	2	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0005	1707	2	2	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0006	1707	1	1	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0007	1707	1	0	0	0	0	1	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0008	1707	1	0	1	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0009	1707	1	1	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF649_chr19_51884235_51910017	1/1	c0001	1518	340	82	64	140	16	36	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0002	1518	29	5	9	10	0	5	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0003	1518	3	0	3	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0004	1518	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0005	1518	1	0	0	0	0	1	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0007	1518	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0008	1518	1	0	0	1	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0009	1518	1	0	0	1	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	c0011	1518	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF652_chr17_49284206_49367250	1/1	c0001	1821	362	75	63	173	17	32	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0002	1821	8	1	5	0	1	1	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0003	1821	5	5	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0004	1821	2	2	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0005	1821	2	1	1	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0006	1821	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0007	1821	1	0	1	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	c0008	1821	1	0	0	0	0	1	copy fasta	ZNF652	chr17	49284206	49367250
ZNF653_chr19_11478429_11510839	1/0	c0001	1848	199	15	47	96	12	28	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0002	1848	70	56	1	4	0	9	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0003	1848	17	3	11	2	0	1	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0004	1848	10	0	0	10	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0005	1848	9	8	1	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0006	1848	5	4	1	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	c0007	1848	5	5	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/1	c0008	1848	4	0	1	0	0	2	copy fasta	ZNF653	chr19	11478429	11510839