Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF658_chr9_66895725_66926426	0/0	c0023	3180	1	0	0	1	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0024	3180	1	0	1	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	c0025	3180	1	0	1	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF660_chr3_44579964_44604694	1/1	c0001	996	301	98	74	83	16	28	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	c0002	996	2	0	0	2	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	c0003	996	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	c0004	996	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	c0005	996	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF662_chr3_42901142_42924334	0/1	c0001	1281	337	75	68	133	14	46	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	1/0	c0002	1281	21	17	3	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0003	1281	14	0	0	14	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0004	1281	2	1	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0005	1281	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0006	1281	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0007	1281	1	0	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0008	1281	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0009	1281	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0010	1281	1	0	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	c0012	1281	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF664_chr12_123968215_124020427	1/1	c0001	786	288	86	58	94	12	36	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	c0002	786	2	0	0	2	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF665_chr19_53157424_53198358	0/0	c0001	2037	198	14	35	109	9	31	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/1	c0002	2037	79	34	14	26	1	3	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0003	2037	58	19	10	20	5	4	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	1/0	c0004	2037	38	10	8	18	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0005	2037	8	0	6	0	1	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0006	2037	3	0	0	3	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0007	2037	3	3	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0008	2037	2	0	0	0	0	2	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0009	2037	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0010	2037	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0011	2037	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0012	2037	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0013	2037	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0014	2037	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0015	2037	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0016	1989	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0017	2037	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0018	2037	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0019	2037	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0020	2037	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	c0021	2037	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF667_chr19_56434329_56482345	0/1	c0001	1833	158	33	31	70	4	19	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0002	1833	90	24	11	48	1	6	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0003	1833	45	11	14	11	2	7	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0004	1833	40	8	12	10	2	8	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0005	1833	11	9	0	0	2	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0006	1833	5	0	4	0	1	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0007	1833	4	4	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345