Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF667_chr19_56434329_56482345	0/0	c0008	1833	2	2	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	1/0	c0009	1833	1	0	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0010	1833	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0011	1833	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0012	1833	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0013	1833	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0014	1833	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	c0015	1833	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF668_chr16_31055847_31079240	1/0	c0001	1860	145	67	28	18	6	25	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0002	1860	108	2	31	66	5	4	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/1	c0003	1860	23	2	10	0	5	5	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0004	1860	10	9	1	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0005	1860	5	5	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0006	1860	3	0	0	3	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0007	1860	1	1	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0008	1860	1	0	0	1	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0009	1860	1	1	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	c0010	1860	1	1	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF669_chr1_247094962_247109356	1/1	c0001	1137	374	82	72	158	16	44	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0002	1137	8	1	7	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0003	1137	3	2	1	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0004	1137	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0005	1137	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0006	1137	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0007	1137	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	c0008	1137	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF66_chr19_20771304_20814995	1/0	c0001	1722	123	30	27	50	4	11	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/1	c0002	1722	96	17	16	48	4	10	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0003	1722	73	27	13	24	2	7	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0004	1722	48	0	3	33	2	10	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0005	1722	14	0	0	14	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0006	1806	8	0	3	1	2	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0007	1722	8	0	5	1	0	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0008	1722	5	0	0	5	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0009	1806	4	4	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0010	1722	4	0	3	0	1	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0011	1806	2	2	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0012	1722	2	2	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0013	1806	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0014	1806	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0015	1722	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0016	1722	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0017	1722	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0018	1722	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0019	1638	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0020	1722	1	0	0	0	1	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0021	1722	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0022	1722	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	c0023	1722	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF670_chr1_247029637_247083811	1/1	c0001	1170	319	90	65	109	14	39	copy fasta	ZNF670	chr1	247029637	247083811