Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF670_chr1_247029637_247083811	0/0	c0002	1170	3	1	1	0	1	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	c0003	1170	1	0	0	0	1	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	c0004	1170	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	c0005	1170	1	0	0	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	c0006	1170	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF671_chr19_57714751_57732624	1/0	c0001	1605	339	50	67	164	14	43	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/1	c0002	1605	69	34	4	25	2	3	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0003	1605	8	8	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0004	1605	4	2	2	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0005	1605	2	0	0	2	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0006	1605	1	1	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0007	1605	1	0	0	1	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0008	1605	1	0	1	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	c0009	1605	1	1	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF672_chr1_248833224_248854517	1/1	c0001	1359	294	53	63	133	13	30	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0002	1359	58	3	10	37	1	7	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0003	1359	55	16	1	34	0	4	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0004	1359	11	11	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0005	1359	6	6	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0006	1359	1	0	0	0	0	1	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0007	1359	1	0	0	1	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0008	1359	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0009	1359	1	0	0	1	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0010	1359	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	c0011	1359	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF674_chrX_46492725_46550421	1/1	c0001	1731	274	52	52	129	13	26	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	c0002	1731	6	5	1	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	c0003	1731	3	3	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	c0004	1731	1	1	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	c0005	1731	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	c0006	1731	1	1	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	c0007	1731	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF675_chr19_23647801_23692212	0/0	c0001	1707	181	32	32	97	5	15	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/1	c0002	1707	104	32	19	33	4	15	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0003	1707	65	7	5	45	0	8	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	1/0	c0004	1707	9	8	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0005	1707	5	4	1	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0006	1707	3	0	0	3	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0007	1707	2	2	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0008	1707	2	2	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0009	1707	1	0	0	0	1	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0010	1623	1	1	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0011	1707	1	0	0	1	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0012	1707	1	0	1	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	c0013	1707	1	0	0	1	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF676_chr19_22174089_22201951	0/0	c0001	2019	207	25	26	120	10	26	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0002	2019	85	42	14	20	1	8	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0003	2019	65	2	11	43	1	8	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/1	c0004	2019	24	3	13	4	2	1	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0005	2019	15	0	0	15	0	0	copy fasta	ZNF676	chr19	22174089	22201951