Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF676_chr19_22174089_22201951	0/0	c0006	2019	10	10	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0007	2019	7	2	3	0	2	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0008	2019	3	2	1	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0009	2019	3	1	2	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0010	2019	2	2	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0011	2019	2	2	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0012	2019	1	0	0	0	0	1	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0013	2019	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0014	1935	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0015	2019	1	0	1	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0016	2019	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0017	2019	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0018	2019	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0019	2019	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0020	2019	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0021	2019	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0022	2019	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0023	2019	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0024	1935	1	0	1	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0025	2019	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0026	2271	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	c0027	2019	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF677_chr19_53230381_53259873	1/0	c0001	1755	191	61	44	57	12	16	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/1	c0002	1755	181	12	25	118	3	22	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0003	1755	9	8	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0004	1755	9	8	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0005	1755	3	3	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0006	1755	3	0	0	0	1	2	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0007	1755	2	1	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0008	1755	2	0	2	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0009	1755	1	1	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0010	1755	1	0	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0011	1755	1	0	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0012	1755	1	1	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0013	1755	1	0	0	1	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	c0014	1755	1	1	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF678_chr1_227558556_227667461	1/1	c0001	1578	357	75	69	157	18	36	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0002	1074	15	0	5	9	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0003	1578	6	6	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0004	1578	5	5	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0005	1578	4	4	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0006	1578	2	0	2	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0007	1578	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0008	1578	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0009	1578	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0010	1578	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	c0011	1578	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF679_chr7_64223474_64271931	1/1	c0001	1236	225	31	33	134	5	20	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0002	1236	63	25	13	20	1	4	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0003	1236	56	27	15	0	3	11	copy fasta	ZNF679	chr7	64223474	64271931