Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF679_chr7_64223474_64271931	0/0	c0004	1236	48	0	5	38	2	3	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0005	1236	18	4	8	0	3	3	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0006	1236	6	6	0	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0007	1236	2	0	2	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0008	1236	2	2	0	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0009	1236	1	0	0	0	0	1	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	c0010	1236	1	1	0	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF680_chr7_64514878_64568071	0/1	c0001	1593	225	69	41	88	7	19	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	1/0	c0002	1593	116	13	21	61	5	15	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	c0003	1593	37	0	6	27	2	2	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	c0004	1593	5	5	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	c0005	1593	1	1	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF681_chr19_23734195_23763891	0/0	c0001	1938	253	58	50	108	13	24	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0002	1938	67	7	5	48	0	7	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/1	c0003	1936	39	0	8	20	3	7	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	1/0	c0004	1938	10	8	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0005	1937	6	5	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0006	1938	4	4	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0007	1938	4	0	2	0	0	2	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0008	1938	3	3	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0009	1938	2	2	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0010	1938	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0011	1938	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0012	1936	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0013	1938	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0014	1938	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	c0015	1938	1	0	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF682_chr19_19999418_20044505	1/1	c0001	1497	216	29	44	114	9	18	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0002	1497	55	23	11	10	3	8	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0003	1497	46	3	9	31	0	3	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0004	1497	18	13	4	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0005	1497	11	8	0	0	0	3	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0006	1497	9	0	0	8	0	1	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0007	1495	8	0	0	8	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0008	1497	6	6	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0009	1497	6	5	0	0	0	1	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0010	1497	4	4	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0011	1497	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0012	1497	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0013	1497	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0014	1497	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	c0015	1497	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF683_chr1_26356634_26377750	0/0	c0001	1515	126	9	17	87	0	13	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0002	1515	105	9	30	52	5	9	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	1/1	c0003	1515	84	25	19	24	5	9	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0004	1491	40	21	3	8	4	4	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0005	1515	21	8	6	1	2	4	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0006	1491	7	7	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0007	1515	6	6	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0008	1515	4	3	1	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750