Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF683_chr1_26356634_26377750	0/0	c0009	1515	2	2	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0010	1515	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0011	1515	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0013	1515	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0014	1515	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0015	1515	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0016	1491	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0017	1491	1	0	0	0	0	1	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0018	1515	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	c0020	1491	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF684_chr1_40526637_40553167	1/1	c0001	1137	216	55	42	80	12	25	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0002	1137	125	13	24	69	4	15	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0003	1137	15	0	1	13	0	1	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0004	1137	15	9	4	0	2	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0005	1137	7	6	1	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0006	1137	3	3	0	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0007	1137	2	2	0	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	c0008	1137	1	0	0	0	0	1	copy fasta	ZNF684	chr1	40526637	40553167
ZNF687_chr1_151277299_151297176	1/1	c0001	3714	286	61	50	127	11	35	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0002	3714	35	7	8	16	3	1	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0003	3714	11	1	7	0	0	3	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0004	3714	7	7	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0005	3714	5	5	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0006	3714	4	0	0	4	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0007	3717	4	1	0	0	3	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0008	3714	3	0	0	0	1	2	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0009	3714	2	0	2	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0010	3714	2	2	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0011	3714	2	2	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0012	3714	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0013	3714	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0014	3714	1	0	1	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0015	3714	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0016	3714	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0017	3714	1	0	0	0	0	1	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0018	3714	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0019	3714	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0020	3714	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0021	3714	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0022	3714	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0023	3714	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0024	3714	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0025	3714	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	c0026	3734	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF688_chr16_30564726_30576714	1/1	c0001	831	289	85	51	104	18	29	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	c0002	831	6	4	1	0	0	1	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	c0003	831	3	0	0	3	0	0	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	c0004	831	1	0	0	1	0	0	copy fasta	ZNF688	chr16	30564726	30576714