JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTN3A1_chr6_26397275_26420208	0/0	c0004	1542	40	9	17	2	1	11	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0005	1542	8	3	2	0	0	3	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0006	1542	6	2	3	1	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0007	1542	6	0	5	0	1	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0008	1542	3	3	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0009	1542	3	0	3	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0010	1542	2	0	0	2	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0011	1542	2	1	1	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0012	1542	1	0	0	1	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0013	1542	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0014	1542	1	0	0	1	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0015	1542	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	c0016	1542	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A2_chr6_26360198_26383312	1/1	c0001	1005	232	48	46	99	10	27	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0002	1005	45	15	14	2	1	13	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0003	1005	28	0	3	25	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0004	1005	23	18	4	0	1	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0005	1005	18	0	0	14	0	4	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0006	1005	17	2	4	8	1	2	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0007	1005	5	0	3	1	1	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0008	1005	4	0	0	4	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0009	1005	3	3	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0010	1005	3	0	2	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0011	1005	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0012	1005	1	0	0	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0013	1005	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	c0014	1005	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A3_chr6_26435504_26458415	1/1	c0001	1755	313	69	42	160	10	30	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0002	1755	53	16	21	2	1	13	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0003	1755	18	0	4	11	3	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0004	1755	7	7	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0005	1755	4	4	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0006	1755	2	0	2	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0007	1755	2	0	0	2	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0008	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0009	1755	1	0	1	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0010	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0011	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0012	1755	1	0	0	0	0	1	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0013	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0014	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0015	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0016	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0017	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	c0018	1755	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTNL2_chr6_32388339_32412181	0/1	c0001	1449	179	47	33	68	7	23	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0002	1449	77	16	26	20	4	11	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0003	1449	45	0	0	39	0	6	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0004	1448	31	18	5	6	0	2	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0005	1449	24	8	5	7	4	0	copy fasta	BTNL2	chr6	32388339	32412181