Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF69_chr19_11882782_11911696	0/0	c0002	1701	30	22	2	5	0	1	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0003	1701	20	16	2	0	0	2	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0004	1701	4	0	1	3	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0005	1701	4	0	3	0	0	1	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0006	1701	3	3	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0007	1701	2	1	1	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0008	1701	2	0	0	0	0	2	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0009	1701	1	1	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0010	1701	1	0	0	1	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0011	1701	1	0	0	0	0	1	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0012	1701	1	0	0	1	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	c0013	1701	1	1	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF700_chr19_11920107_11955763	1/1	c0001	2229	253	42	50	115	13	31	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0002	2229	38	23	5	7	1	2	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0003	2229	15	11	3	0	0	1	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0004	2229	8	0	6	0	0	2	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0005	2229	7	7	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0006	2229	7	7	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0007	2229	4	0	2	2	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0008	2313	3	0	3	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0009	2229	2	0	2	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0010	2229	2	2	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0011	2229	2	2	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0012	2229	1	1	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0013	2229	1	0	0	1	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0014	2229	1	0	0	1	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0015	2229	1	1	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0016	2229	1	0	1	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0017	2229	1	0	0	1	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0018	2229	1	0	0	0	0	1	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0019	2229	1	0	0	0	0	1	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	c0020	2229	1	0	0	1	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF701_chr19_52565287_52592174	1/0	c0001	1398	143	3	29	92	2	16	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/1	c0002	1398	104	6	19	56	8	14	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0003	1398	69	12	21	23	3	10	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0004	1398	48	32	8	6	1	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0005	1398	36	27	5	3	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0006	1398	15	0	0	15	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0007	1398	10	0	0	9	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0008	1398	6	6	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0009	1398	4	1	2	0	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0010	1398	4	0	0	3	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0011	1398	4	4	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0012	1398	2	2	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0013	1398	2	0	0	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0014	1398	2	2	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0015	1398	2	2	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0016	1256	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0017	1398	1	1	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0018	1398	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174