Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF701_chr19_52565287_52592174	0/0	c0019	1398	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	c0020	1398	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF703_chr8_37690782_37705019	1/1	c0001	1773	253	82	46	78	16	29	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0002	1773	6	0	4	2	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0003	1776	3	1	0	1	0	1	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0004	1815	2	0	1	1	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0005	1773	1	0	0	1	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0006	1773	1	0	1	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0007	1773	1	0	0	1	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	c0008	1773	1	1	0	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF704_chr8_80623451_80879781	1/1	c0001	1239	70	26	17	7	6	12	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	c0002	1239	39	26	9	1	2	1	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	c0003	1239	8	8	0	0	0	0	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	c0004	1239	1	0	0	0	0	1	copy fasta	ZNF704	chr8	80623451	80879781
ZNF705A_chr12_8152015_8185046	1/1	c0001	903	183	28	35	89	5	24	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0002	903	180	31	27	98	4	20	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0003	903	21	19	1	1	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0004	903	13	1	11	0	1	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0005	903	6	6	0	0	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0006	903	5	2	0	0	0	3	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0007	903	3	3	0	0	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0008	903	2	0	0	2	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0009	903	2	0	0	2	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0010	903	2	2	0	0	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0011	903	1	0	0	0	0	1	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0012	903	1	1	0	0	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	c0013	903	1	1	0	0	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705B_chr8_7921337_7957413	0/0	c0001	903	34	5	6	13	2	8	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0002	903	23	0	5	12	2	4	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0003	903	7	1	2	0	2	2	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0004	903	6	4	0	0	0	2	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0005	903	4	3	1	0	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0006	903	2	0	0	2	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0007	903	1	1	0	0	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0008	903	1	1	0	0	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0009	903	1	0	0	0	1	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0010	903	1	1	0	0	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0011	903	1	0	0	0	1	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	c0012	903	1	0	0	1	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705D_chr8_12084338_12120516	0/0	c0001	903	3	3	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705D_chr8_12084338_12120516	0/1	c0002	903	1	0	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705D_chr8_12084338_12120516	0/0	c0003	903	1	1	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705G_chr8_7350517_7390558	1/1	c0001	903	175	21	21	103	8	20	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0002	903	67	7	11	32	2	15	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0003	903	12	1	5	4	2	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0004	903	6	6	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0005	903	5	0	0	5	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0006	903	3	3	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0007	903	3	3	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0008	903	2	2	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558