Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF705G_chr8_7350517_7390558	0/0	c0009	903	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0010	903	1	1	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0011	903	1	0	0	0	0	1	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0012	903	1	0	1	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0013	903	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0014	903	1	1	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	c0015	903	1	1	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF706_chr8_101192052_101210673	1/1	c0001	231	369	92	70	157	10	38	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	c0002	231	1	0	0	1	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF707_chr8_143679479_143700385	0/0	c0001	1116	221	38	29	139	3	12	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/1	c0002	1116	195	44	53	50	11	36	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0003	1116	11	10	1	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0004	1116	2	2	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0005	1116	1	0	0	1	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0006	1116	1	1	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0007	1116	1	0	0	1	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0008	1116	1	1	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0009	1116	1	0	1	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	c0010	1116	1	0	0	1	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF708_chr19_21286160_21334410	0/0	c0001	1692	169	52	29	65	4	19	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	1/0	c0002	1692	62	1	4	49	2	5	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0003	1692	54	9	17	19	2	7	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/1	c0004	1692	30	1	13	6	4	5	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0005	1692	7	6	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0006	1692	5	5	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0007	1692	4	2	2	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0008	1692	2	2	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0009	1692	2	2	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0010	1608	2	0	2	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0011	1692	2	2	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0012	1692	1	0	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0013	1692	1	1	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0014	1692	1	1	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0015	1692	1	0	0	0	0	1	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0016	1692	1	0	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0017	1692	1	0	0	1	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	c0018	1692	1	0	0	0	0	1	copy fasta	ZNF708	chr19	21286160	21334410
ZNF709_chr19_12456184_12489816	1/1	c0001	1926	294	79	40	137	6	30	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	c0002	1926	64	17	18	21	4	4	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	c0003	1926	1	0	1	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	c0004	1926	1	0	1	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF70_chr22_23733682_23756112	0/0	c0001	1341	164	45	23	76	3	17	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	1/0	c0002	1341	159	19	46	59	11	23	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/1	c0003	1341	73	14	9	43	2	4	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0004	1341	6	5	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0005	1341	5	5	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0006	1341	4	0	0	4	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0007	1341	3	0	3	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0008	1341	3	3	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0009	1341	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112