Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF70_chr22_23733682_23756112	0/0	c0010	1341	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0011	1341	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0012	1341	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0013	1341	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0014	1341	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0015	1341	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	c0016	1341	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF710_chr15_89996324_90087191	0/0	c0001	1995	135	33	21	54	6	21	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	1/0	c0002	1995	59	18	18	10	3	9	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0003	1995	24	2	5	17	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/1	c0004	1995	21	7	8	0	1	4	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0005	1995	16	13	3	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0006	1995	9	9	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0007	1995	4	0	0	4	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0008	1995	2	1	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0009	1995	2	0	0	0	2	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0010	1995	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0011	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0012	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0013	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0014	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0015	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0016	1995	1	0	0	1	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0017	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0018	1995	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	c0019	1995	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF711_chrX_85238991_85278357	1/1	c0001	2424	268	74	35	124	7	26	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0002	2424	2	0	0	0	0	2	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0003	2424	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0004	2424	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0005	2424	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0006	2425	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0007	2424	1	0	1	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	c0008	2423	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF713_chr7_55882456_55947225	1/1	c0001	1332	278	65	48	123	12	28	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	c0002	1332	130	31	18	66	3	12	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	c0003	1332	1	0	0	0	1	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	c0004	1332	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF714_chr19_21077203_21130094	0/1	c0001	1668	158	17	35	69	11	25	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0002	1665	62	21	5	30	2	4	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	1/0	c0003	1668	43	37	5	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0004	1668	11	1	6	0	2	2	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0005	1668	3	3	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0006	1668	2	0	2	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0007	1668	2	2	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0008	1665	2	2	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0009	1668	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0010	1668	1	0	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0011	1668	1	0	0	0	0	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0012	1668	1	0	0	0	1	0	copy fasta	ZNF714	chr19	21077203	21130094