Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF714_chr19_21077203_21130094	0/0	c0013	1668	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0014	1665	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	c0015	1665	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF716_chr7_57445177_57478559	1/1	c0001	1488	222	40	40	107	6	27	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0002	1488	167	32	28	89	4	14	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0003	1488	5	5	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0004	1488	5	5	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0005	1488	4	4	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0006	1488	4	4	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0007	1488	3	0	0	3	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0008	1488	3	0	3	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0009	1488	2	0	0	2	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0010	1488	2	0	0	0	0	2	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0011	1488	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0012	1488	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0013	1488	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0014	1488	1	0	0	0	0	1	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	c0015	1488	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF717_chr3_75730868_75790549	0/0	c0001	2736	110	8	26	62	3	11	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0002	2745	63	2	16	36	6	3	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	1/0	c0003	2745	50	11	9	21	1	7	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0004	2745	35	19	7	3	0	6	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0005	2745	24	0	0	23	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0006	2736	19	12	3	0	2	2	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0007	2736	14	14	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0008	2736	13	12	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/1	c0009	2736	7	0	1	0	2	3	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0010	2745	3	3	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0011	2736	3	3	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0012	2736	3	3	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0013	2745	2	2	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0014	2745	2	2	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0015	2745	1	0	0	1	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0016	2736	1	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0017	2736	1	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0018	2736	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0019	2736	1	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0020	2736	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0021	2736	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0022	2736	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0023	2745	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0024	2736	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0025	2745	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	c0026	2745	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF718_chr4_119501_169162	0/1	c0001	1214	157	33	29	72	5	17	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0002	1437	75	0	22	36	5	12	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	1/0	c0003	1437	41	16	7	6	2	9	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0004	1437	16	10	2	4	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0005	1437	13	10	1	0	0	2	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0006	1437	11	4	3	0	0	4	copy fasta	ZNF718	chr4	119501	169162