Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF718_chr4_119501_169162	0/0	c0007	1432	6	6	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0008	1437	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0009	1214	1	0	0	1	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0010	1214	1	0	1	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0011	1214	1	0	0	0	0	1	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0012	1214	1	0	0	1	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0013	1214	1	0	0	0	0	1	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0014	1437	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0015	1437	1	0	1	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0016	1432	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	c0018	1437	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF71_chr19_56590302_56629486	1/0	c0001	1650	275	29	53	152	12	28	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0002	1650	84	18	16	43	1	6	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0003	1650	16	16	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0004	1650	11	11	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0005	1650	7	7	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/1	c0006	1650	6	0	4	0	1	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0007	1650	5	5	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0008	1650	4	0	0	0	0	4	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0009	1650	3	3	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0010	1650	2	0	0	0	0	2	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0011	1650	2	0	1	0	0	1	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0012	1650	2	0	0	0	0	2	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0013	1650	2	2	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0014	1650	2	2	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0015	1650	1	0	0	0	0	1	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0016	1650	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0017	1650	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0018	1650	1	0	1	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0019	1650	1	0	0	0	0	1	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0020	1650	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0021	1650	1	0	1	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0022	1650	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0023	1650	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0024	1650	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	c0025	1650	1	0	0	0	0	1	copy fasta	ZNF71	chr19	56590302	56629486
ZNF721_chr4_434988_504156	1/1	c0001	2772	210	35	41	96	11	25	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0002	2772	61	18	9	26	3	5	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0003	2772	7	6	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0004	2772	5	4	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0005	2772	5	4	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0006	2770	5	3	0	0	0	2	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0007	2772	4	4	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0008	2772	4	3	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0009	2772	3	0	3	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0010	2772	3	3	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0011	2772	2	2	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0012	2772	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0013	2772	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156