Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF721_chr4_434988_504156	0/0	c0014	3696	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0015	2772	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0016	2688	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0017	2772	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0018	3612	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0019	2772	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0020	2772	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0021	2772	1	0	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0022	2788	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0023	2772	1	0	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0024	2772	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0025	2772	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	c0026	2772	1	0	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF722_chr7_63993849_64023081	1/0	c0001	1155	268	66	37	139	5	20	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/1	c0002	1155	148	28	31	60	10	18	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	c0003	1155	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	c0004	1155	1	1	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	c0005	1155	1	0	0	0	1	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	c0006	1155	1	0	1	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	c0007	1155	1	0	1	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	c0008	1155	1	1	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF723_chr19_22827291_22863667	1/1	c0001	1542	256	46	49	123	9	27	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	c0002	1542	102	39	11	43	4	5	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	c0003	1542	2	2	0	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	c0004	1542	1	1	0	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	c0005	1542	1	0	0	0	1	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	c0006	1542	1	1	0	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	c0007	1542	1	1	0	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF724_chr19_23216599_23255394	0/1	c0001	1860	114	8	21	64	9	11	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0002	1860	106	32	19	39	1	15	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	1/0	c0003	1860	57	17	10	21	4	4	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0004	1860	15	14	1	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0005	1860	7	6	1	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0006	1860	7	7	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0007	1860	7	1	6	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0008	1860	2	2	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0009	1860	2	2	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0010	1860	2	0	0	2	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0012	1860	1	1	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0014	1808	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0015	1860	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0016	1860	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	c0017	1860	1	1	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF726_chr19_23909886_23939484	1/1	c0001	1851	346	79	51	173	13	28	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0002	1851	28	5	4	6	1	12	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0003	1851	12	1	6	0	1	4	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0004	1851	5	0	5	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0005	1847	4	4	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484