Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF726_chr19_23909886_23939484	0/0	c0006	1683	4	2	2	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0007	1851	3	0	0	3	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0008	1851	3	0	3	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0009	1851	2	0	2	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0010	1851	2	2	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0011	1767	2	2	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0012	1851	1	0	1	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0013	1851	1	0	0	1	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0014	1851	1	0	0	1	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0015	1851	1	0	0	0	1	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	c0016	1851	1	1	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF727_chr7_64040434_64090339	1/0	c0001	1500	140	31	21	70	6	11	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/1	c0002	1500	135	25	34	52	6	17	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0003	1500	56	2	8	45	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0004	1500	43	11	11	14	2	5	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0005	1500	8	8	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0006	1500	7	7	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0007	1500	4	4	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0008	1500	4	4	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0009	1497	4	0	0	4	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0010	1500	2	2	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0011	1500	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0012	1500	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0013	1500	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0014	1500	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	c0015	1500	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF728_chr19_22969883_23008176	1/1	c0001	1869	222	44	42	98	8	28	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0002	1869	52	30	7	12	2	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0003	1869	36	7	6	20	0	3	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0004	1869	3	2	1	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0005	1869	2	0	0	0	0	2	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0006	1869	2	2	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0007	1869	2	2	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0008	1869	1	1	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0009	1953	1	0	0	0	0	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0010	1869	1	0	0	1	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0011	1869	1	0	0	1	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	c0012	2205	1	0	0	0	0	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF729_chr19_22281441_22322176	0/0	c0001	3759	229	38	37	122	6	26	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	1/1	c0002	3759	98	20	19	46	6	5	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0003	3759	13	0	4	7	0	2	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0004	3759	6	6	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0005	3759	5	5	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0006	3759	5	5	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0007	3759	4	3	1	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0008	3759	3	3	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0009	3759	2	2	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0010	3759	2	0	2	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0011	3759	2	0	0	2	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0012	3759	2	0	0	2	0	0	copy fasta	ZNF729	chr19	22281441	22322176