Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF729_chr19_22281441_22322176	0/0	c0013	3759	2	0	0	0	0	2	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0014	3759	2	2	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0015	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0016	3759	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0017	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0018	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0019	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0020	3759	1	0	0	0	0	1	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0021	3759	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0022	3759	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0023	3759	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0024	3759	1	0	1	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0025	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0026	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0027	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0028	3759	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0029	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0030	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	c0031	3759	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF730_chr19_23112025_23152221	0/0	c0001	1512	158	42	33	63	2	18	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	1/0	c0002	1512	70	33	11	19	2	4	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0003	1512	26	5	1	20	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0004	1512	15	4	3	7	0	1	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0005	1512	7	0	3	0	2	2	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/1	c0006	1512	4	0	3	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0007	1512	3	3	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0008	1512	2	0	2	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0009	1512	1	0	0	0	0	1	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0010	1512	1	0	0	1	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0011	1512	1	1	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0012	1512	1	1	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0013	1512	1	0	0	0	0	1	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0014	1512	1	0	0	0	0	1	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	c0015	1512	1	1	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF732_chr4_265675_310474	1/1	c0001	1758	206	45	44	83	9	23	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0002	1758	80	10	20	31	4	15	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0003	1758	9	7	2	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0004	1758	9	0	5	0	0	4	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0005	1758	4	4	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0006	1758	3	0	0	3	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0007	1590	3	0	0	3	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0008	1758	2	2	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0009	1758	2	0	0	2	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0010	1758	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0011	1758	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0012	1758	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0013	1758	1	0	0	1	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0014	1758	1	0	0	1	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0015	1758	1	0	1	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	c0016	1758	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474