JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTNL2_chr6_32388339_32412181	0/0	c0006	1449	22	0	5	12	3	2	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0007	1448	17	0	1	15	0	1	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0008	1448	17	0	0	17	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0009	1449	15	0	1	14	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0010	1449	10	0	0	10	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0011	1449	5	2	3	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0012	1448	2	2	0	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0013	1449	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0014	1449	1	0	0	0	0	1	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0015	1449	1	1	0	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0016	1449	1	0	1	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0017	1449	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0018	1449	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0019	1449	1	0	1	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0020	1448	1	0	1	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	c0021	1448	1	0	0	1	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL3_chr5_180983846_181011727	1/0	c0001	1401	115	23	25	37	4	25	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0002	1401	40	20	3	10	2	5	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0003	1401	19	10	1	4	0	4	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0004	1401	6	0	0	6	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0005	1401	4	3	1	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0006	1401	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0007	1401	2	0	0	0	0	2	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0008	1401	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0009	1401	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0010	1401	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0011	1401	2	2	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0012	1401	1	0	0	1	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0013	1401	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0014	1401	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0015	1401	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0016	1401	1	0	0	0	0	1	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/1	c0017	1401	1	0	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0018	1401	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0019	1401	1	0	0	0	0	1	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0020	1401	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	c0021	1401	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL8_chr5_180894159_180955906	1/1	c0001	1503	78	15	19	27	4	11	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0002	1503	29	15	3	9	0	2	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0003	1503	21	2	1	14	0	4	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0004	1503	15	0	5	4	1	5	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0005	1503	9	5	1	0	1	2	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0006	1503	7	3	0	0	0	4	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0007	1503	4	4	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0008	1503	3	3	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0009	1503	3	3	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0010	1503	2	0	0	0	0	2	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0011	1503	2	0	0	2	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0012	1503	2	2	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0013	1503	2	2	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906