Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF732_chr4_265675_310474	0/0	c0017	1758	1	0	0	0	1	0	copy fasta	ZNF732	chr4	265675	310474
ZNF735_chr7_64202203_64225290	0/0	c0001	1239	134	45	33	41	5	10	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0002	1239	100	7	15	65	4	9	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	1/1	c0003	1239	82	14	17	31	6	12	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0004	1239	57	20	4	29	1	3	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0005	1239	46	0	4	35	0	7	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0006	1239	29	1	5	21	2	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0007	1239	10	9	1	0	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0008	1239	2	0	1	0	0	1	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0009	1239	1	1	0	0	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0010	1239	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0011	1239	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0012	1239	1	1	0	0	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	c0014	1239	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF736_chr7_64308961_64361634	1/1	c0001	1284	239	25	45	128	10	29	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0002	1284	95	21	10	59	0	5	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0003	1284	57	31	18	0	2	6	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0004	1284	7	7	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0005	1284	5	5	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0006	1284	1	0	0	1	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0007	1284	1	1	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0008	1284	1	0	1	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0009	1284	1	0	0	0	0	1	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	c0010	1284	1	0	0	0	0	1	copy fasta	ZNF736	chr7	64308961	64361634
ZNF737_chr19_20532992_20570781	0/0	c0001	1611	138	21	35	60	7	15	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	1/1	c0002	1611	97	7	27	36	6	19	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0003	1611	41	3	1	36	1	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0004	1611	13	13	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0005	1611	10	8	2	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0006	1611	9	8	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0007	1611	4	4	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0008	1611	3	0	0	3	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0009	1611	3	3	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0010	1611	3	3	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0011	1611	2	1	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0012	1611	2	0	0	2	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0013	1611	2	2	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0014	1611	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0015	1611	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0016	1611	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0017	1359	1	0	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0018	1863	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0019	1611	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0020	1611	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0021	1611	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	c0022	1527	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF738_chr19_21354000_21393582	0/0	c0001	1128	185	58	25	77	7	18	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	1/0	c0002	1128	74	12	6	49	2	4	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0003	1044	46	5	17	15	1	8	copy fasta	ZNF738	chr19	21354000	21393582