Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF738_chr19_21354000_21393582	0/1	c0004	1128	28	2	12	6	2	5	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0005	1128	12	9	1	1	0	1	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0006	1128	3	0	1	0	2	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0007	1128	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0008	1128	1	0	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0009	1128	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0010	1128	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	c0012	1044	1	0	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF740_chr12_53175722_53200142	1/1	c0001	582	389	88	76	166	13	44	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	c0002	604	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	c0003	582	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	c0004	582	1	0	0	0	1	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF746_chr7_149467794_149502809	0/0	c0001	1983	186	54	33	75	7	17	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0002	1983	145	23	24	75	6	17	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0003	1983	39	1	3	35	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0004	1983	9	9	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0005	1983	9	0	0	4	0	5	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0006	1984	8	2	4	1	0	1	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0007	1983	3	0	1	0	0	2	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0008	1984	3	1	0	2	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0009	1983	2	0	0	2	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0010	1983	2	1	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0011	1984	2	0	0	0	0	2	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0012	1983	2	0	2	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0013	1984	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0014	1983	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0015	1983	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0016	1983	1	0	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0017	1983	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0018	1983	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0019	1956	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0020	1984	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0021	1983	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0022	1983	1	0	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0023	1983	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0024	1983	1	0	0	0	1	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0025	1983	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	c0026	1984	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF747_chr16_30525367_30539858	1/1	c0001	996	337	89	78	118	18	32	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	c0002	996	4	0	0	0	0	4	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	c0003	996	3	3	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	c0004	996	2	2	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	c0005	996	2	0	2	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	c0006	996	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	c0007	996	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF749_chr19_57430325_57452101	0/1	c0001	2337	266	49	46	132	8	30	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0002	2337	66	12	21	21	6	6	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	1/0	c0003	2337	60	10	9	31	3	6	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0004	2338	11	0	1	10	0	0	copy fasta	ZNF749	chr19	57430325	57452101