Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF749_chr19_57430325_57452101	0/0	c0005	2337	6	1	0	2	0	3	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0006	2337	4	4	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0007	2337	3	3	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0008	2337	3	0	3	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0009	2337	3	1	2	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0010	2337	3	0	0	3	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0011	2337	3	3	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0012	2337	2	0	0	2	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0013	2337	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0014	2337	2	0	0	1	1	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0015	2337	2	2	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0016	2338	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0017	2337	1	0	0	0	0	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0018	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0019	2337	1	0	1	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0020	2337	1	0	0	0	0	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0021	2337	1	0	0	0	0	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0022	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0023	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0024	2337	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0025	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0026	2337	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0027	2337	1	1	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0028	2337	1	0	1	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0029	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0030	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	c0031	2337	1	0	0	1	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF74_chr22_20389151_20413455	1/1	c0001	1935	297	63	55	123	15	39	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0002	1935	46	0	0	45	0	1	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0003	1935	34	22	8	0	2	2	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0004	1935	26	0	5	21	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0005	1935	8	8	0	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0006	1935	2	0	0	2	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0007	1935	2	0	0	2	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0008	1935	2	0	2	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0009	1935	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0010	1935	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0011	1935	1	1	0	0	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0012	1935	1	0	0	0	1	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF74_chr22_20389151_20413455	0/0	c0013	1935	1	0	0	1	0	0	copy fasta	ZNF74	chr22	20389151	20413455
ZNF750_chr17_82824434_82845022	1/1	c0001	2172	192	40	25	90	9	26	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0002	2172	132	19	24	66	7	16	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0003	2172	35	10	7	16	2	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0004	2172	16	11	5	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0005	2172	13	0	13	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0006	2172	9	7	2	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0007	2172	4	4	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0008	2172	4	0	4	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0009	2172	3	0	0	3	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0010	2172	2	2	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022