Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF750_chr17_82824434_82845022	0/0	c0011	2172	2	0	0	2	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0012	2172	2	0	0	2	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0013	2172	1	1	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0014	2172	1	1	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0015	2172	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0016	2172	1	0	1	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0017	2172	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0018	2172	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0019	2172	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0020	2172	1	0	0	1	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0021	2172	1	1	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0022	2172	1	1	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0023	2172	1	1	0	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF750_chr17_82824434_82845022	0/0	c0024	2172	1	0	1	0	0	0	copy fasta	ZNF750	chr17	82824434	82845022
ZNF75A_chr16_3300497_3323851	1/1	c0001	1614	316	82	58	126	11	37	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0002	1614	41	0	0	37	1	3	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0003	1614	29	3	14	6	3	3	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0004	1614	8	8	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0005	1614	2	0	0	0	0	2	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0006	1614	2	2	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0007	1614	1	0	0	1	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0008	1614	1	0	0	1	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0009	1614	1	0	0	1	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0010	1614	1	0	0	0	1	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0011	1614	1	1	0	0	0	0	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75A_chr16_3300497_3323851	0/0	c0012	1614	1	0	0	0	0	1	copy fasta	ZNF75A	chr16	3300497	3323851
ZNF75D_chrX_135280791_135349109	1/1	c0001	1533	235	53	35	121	1	23	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	c0002	1533	23	1	13	2	6	1	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	c0003	1533	11	10	1	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	c0004	1533	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	c0005	1533	1	1	0	0	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF75D_chrX_135280791_135349109	0/0	c0006	1533	1	0	0	1	0	0	copy fasta	ZNF75D	chrX	135280791	135349109
ZNF761_chr19_53426984_53463261	0/1	c0001	2241	157	33	41	54	10	18	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	1/0	c0002	2241	117	12	13	79	3	9	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0003	2241	33	2	7	16	3	5	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0004	2241	32	1	11	17	0	3	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0005	2241	30	1	1	26	0	2	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0006	2241	23	17	2	0	2	2	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0007	2241	14	14	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0008	2241	9	7	0	0	0	2	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0009	2241	9	0	0	9	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0010	2241	6	0	0	6	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0011	2241	6	0	0	6	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0012	2241	4	2	2	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0013	2241	3	3	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0014	2241	2	0	2	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0015	2241	2	0	0	2	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0016	2241	1	0	1	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0017	2241	1	0	0	0	0	1	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0018	2241	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261