Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF761_chr19_53426984_53463261	0/0	c0019	2241	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0020	2241	1	0	0	1	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0021	2241	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0022	2241	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0023	2241	1	0	0	0	0	1	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0024	2241	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0025	2241	1	0	0	0	0	1	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0026	2241	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0027	2241	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF761_chr19_53426984_53463261	0/0	c0028	2241	1	1	0	0	0	0	copy fasta	ZNF761	chr19	53426984	53463261
ZNF763_chr19_11960040_11985617	1/1	c0001	1185	307	44	61	150	15	35	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0002	1185	45	30	5	7	1	2	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0003	1185	11	11	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0004	1185	7	5	2	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0005	1185	6	3	2	0	0	1	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0006	1185	2	0	0	2	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0007	1185	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0008	1185	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0009	1185	1	1	0	0	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0010	1185	1	0	0	0	0	1	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0011	1185	1	0	0	1	0	0	copy fasta	ZNF763	chr19	11960040	11985617
ZNF763_chr19_11960040_11985617	0/0	c0012	1185	1	0	0	0	0	1	copy fasta	ZNF763	chr19	11960040	11985617
ZNF764_chr16_30548764_30563374	1/0	c0001	1224	307	92	58	123	14	19	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0002	1224	12	0	0	0	0	12	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0003	1224	11	0	7	0	1	3	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0004	1224	4	0	0	4	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/1	c0005	1224	3	0	0	0	2	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0006	1224	2	0	0	0	0	2	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0007	1224	1	0	0	0	1	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0008	1224	1	0	1	0	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0009	1224	1	0	0	0	0	1	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0010	1224	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0011	1224	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0013	1224	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0014	1224	1	0	0	1	0	0	copy fasta	ZNF764	chr16	30548764	30563374
ZNF764_chr16_30548764_30563374	0/0	c0015	1224	1	0	0	0	0	1	copy fasta	ZNF764	chr16	30548764	30563374
ZNF765_chr19_53390149_53417009	0/0	c0001	1572	159	31	28	81	5	14	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	1/0	c0002	1572	145	32	13	82	4	13	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/1	c0003	1572	77	4	32	18	6	16	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0004	1572	24	1	0	22	0	1	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0005	1572	23	10	4	9	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0006	1572	6	6	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0007	1572	5	5	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0008	1572	2	2	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0010	1572	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0011	1572	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0013	1572	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009