Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF765_chr19_53390149_53417009	0/0	c0014	1572	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	c0015	1572	1	0	0	0	1	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF766_chr19_52264587_52301046	0/0	c0001	1407	362	61	66	176	14	45	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	c0002	1407	23	18	5	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	c0003	1407	17	14	3	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	c0004	1407	5	0	0	4	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	c0005	1407	5	0	5	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	c0006	1407	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	c0007	1407	1	0	1	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF768_chr16_30519004_30531566	1/0	c0001	1623	137	3	40	81	7	5	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0002	1623	113	41	14	29	4	25	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/1	c0003	1623	82	47	21	1	7	5	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0004	1623	4	0	0	4	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0005	1623	3	0	0	0	0	3	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0006	1623	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0007	1623	1	0	1	0	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0008	1623	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0009	1623	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	c0010	1623	1	1	0	0	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF76_chr6_35254735_35300985	0/0	c0001	1713	140	25	32	68	3	12	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	1/1	c0002	1713	113	26	17	58	2	8	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0003	1713	26	22	2	2	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0004	1713	5	3	2	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0005	1713	5	0	0	5	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0006	1713	4	0	0	4	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0007	1713	2	0	0	2	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0008	1713	2	2	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0009	1713	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0010	1713	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0011	1713	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0012	1713	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0013	1713	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0014	1713	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0015	1713	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0016	1660	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0017	1713	1	0	0	0	1	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0018	1713	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0019	1713	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0020	1713	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	c0021	1713	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF770_chr15_34973341_34993287	0/1	c0001	2076	198	73	31	74	6	13	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	1/0	c0002	2076	183	12	35	99	10	26	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	c0003	2076	6	6	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	c0004	2076	3	0	0	3	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	c0005	2076	1	0	0	0	0	1	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	c0006	2076	1	1	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF771_chr16_30402606_30424414	1/1	c0001	954	321	78	72	109	14	46	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	c0002	954	2	0	0	2	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	c0003	954	1	0	0	1	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	c0004	954	1	0	1	0	0	0	copy fasta	ZNF771	chr16	30402606	30424414