Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF778_chr16_89212703_89242141	0/0	c0013	2274	3	0	0	3	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0014	2274	3	0	3	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0015	2274	2	0	0	0	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0016	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0017	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0018	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0019	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0020	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0021	2274	1	0	0	0	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0022	2274	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0023	2274	1	0	0	0	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0024	2274	1	0	0	0	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0025	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0026	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0027	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0028	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0029	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0030	2274	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0031	2274	1	0	0	0	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0032	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0033	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0034	2274	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0035	2274	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	c0036	2274	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF77_chr19_2928218_2949971	0/0	c0001	1638	170	32	49	45	13	31	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0002	1638	105	9	16	71	2	7	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	1/0	c0003	1638	98	3	6	78	1	9	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0004	1638	27	27	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0005	1638	8	8	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0006	1638	5	5	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0007	1638	5	0	4	0	1	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0008	1638	4	0	0	2	0	2	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0009	1638	3	3	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0010	1638	2	2	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0011	1638	2	0	0	2	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0012	1638	2	2	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0013	1638	2	0	2	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0014	1638	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/1	c0015	1638	1	0	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0016	1638	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0017	1638	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0018	1638	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0019	1652	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0020	1638	1	0	1	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0021	1638	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0022	1638	1	0	0	0	0	1	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0023	1638	1	0	0	0	1	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0024	1638	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0025	1638	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0026	1638	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971