Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF77_chr19_2928218_2949971	0/0	c0027	1638	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	c0028	1638	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF780A_chr19_40068045_40095943	1/1	c0001	1926	243	49	44	115	8	25	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0002	1926	23	23	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0003	1926	22	0	0	22	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0004	1926	9	6	0	1	1	1	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0005	1926	7	7	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0006	1926	4	4	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0007	1926	2	2	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0008	1926	1	0	1	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0009	1926	1	0	0	0	1	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0010	1926	1	0	0	1	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0011	1926	1	0	1	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0012	1926	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	c0013	1926	1	0	0	1	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780B_chr19_40023260_40061231	1/1	c0001	2502	249	76	38	114	3	16	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0002	2502	19	0	4	11	0	4	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0003	2502	9	6	0	1	1	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0004	2502	3	3	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0005	2502	2	2	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0006	2502	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0007	2502	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0008	2502	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0009	2502	1	0	0	0	0	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0010	2502	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0011	2502	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0012	2502	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	c0013	2502	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF782_chr9_96811269_96859514	1/0	c0001	2100	157	22	35	64	11	24	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0002	2100	85	32	4	44	0	5	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0003	2100	21	0	0	19	0	2	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0004	2100	12	11	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/1	c0005	2100	8	0	5	0	1	1	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0006	2100	7	7	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0007	2100	4	4	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0008	2100	3	0	0	3	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0009	2100	3	3	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0010	2100	2	1	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0011	2100	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0012	2100	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0013	2100	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0014	2100	1	0	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0015	2100	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0016	2100	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0017	2100	1	0	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	c0018	2100	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF783_chr7_149257196_149289988	1/1	c0001	1641	334	65	62	165	13	27	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0002	1641	26	1	9	2	3	11	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0003	1641	14	11	3	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	c0004	1641	6	0	0	6	0	0	copy fasta	ZNF783	chr7	149257196	149289988