JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTNL8_chr5_180894159_180955906	0/0	c0014	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0015	1503	1	0	0	0	0	1	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0016	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0017	1503	1	0	1	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0018	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0019	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0020	1503	1	0	0	0	0	1	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0021	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0022	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0023	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0024	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0025	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	c0026	1503	1	1	0	0	0	0	copy fasta	BTNL8	chr5	180894159	180955906
BTNL9_chr5_181035266_181066521	0/1	c0001	1608	149	10	33	75	8	22	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0002	1608	63	6	23	29	3	2	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0003	1608	60	5	14	35	4	2	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0004	1608	22	6	2	10	0	4	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0005	1608	20	1	3	10	3	3	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0006	1608	20	19	1	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0007	1608	10	0	1	4	0	5	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0008	1608	8	3	0	2	0	3	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0009	1608	7	7	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	1/0	c0010	1608	3	0	0	1	0	1	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0011	1608	3	3	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0012	1608	2	0	0	2	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0013	1608	2	2	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0014	1608	2	0	0	0	0	2	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0015	1608	2	0	0	2	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0016	1608	2	0	2	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0017	1608	2	0	2	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0018	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0019	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0020	1608	1	0	0	0	0	1	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0021	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0022	1608	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0023	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0024	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0025	1608	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0026	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0027	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0028	1608	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0029	1608	1	0	1	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	c0030	1608	1	0	0	0	0	1	copy fasta	BTNL9	chr5	181035266	181066521
BTRC_chr10_101349165_101562313	1/0	c0001	1818	239	47	60	92	9	30	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/1	c0002	1818	15	9	2	1	2	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	c0003	1818	5	0	0	5	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	c0004	1818	4	1	2	0	1	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	c0005	1818	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	c0006	1818	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	c0007	1818	1	1	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313