Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF787_chr19_56082366_56126295	0/0	c0013	1149	3	1	2	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0014	1150	3	0	0	3	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0015	1153	2	0	1	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0016	1149	2	2	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0017	1153	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0018	1149	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0019	1150	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0020	1150	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0021	1154	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0022	1151	1	0	0	0	0	1	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0023	1149	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0024	1149	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0025	1153	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0026	1150	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0027	1150	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	c0028	1149	1	1	0	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF789_chr7_99467890_99492605	0/0	c0001	1278	196	91	17	63	6	19	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	1/1	c0002	1278	136	6	31	68	8	21	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	0/0	c0003	1278	1	0	0	1	0	0	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	0/0	c0004	1278	1	1	0	0	0	0	copy fasta	ZNF789	chr7	99467890	99492605
ZNF790_chr19_36812428_36843387	1/1	c0001	1911	226	43	49	97	11	24	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0002	1911	108	31	17	43	3	14	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0003	1911	6	6	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0004	1911	6	6	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0005	1911	4	0	4	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0006	1911	2	2	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0007	1911	2	0	0	0	2	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0008	1911	2	0	0	2	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0009	1911	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0010	1911	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0011	1911	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	c0012	1911	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF791_chr19_12605920_12638834	1/1	c0001	1731	357	73	65	161	14	42	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0002	1731	16	14	2	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0003	1731	2	0	0	2	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0004	1731	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0005	1731	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0006	1731	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0007	1731	1	0	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0008	1731	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0009	1731	1	0	0	1	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	c0010	1731	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF792_chr19_34951354_34969229	1/1	c0001	1899	154	12	40	75	10	15	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0002	1899	107	40	14	42	3	8	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0003	1899	105	5	13	76	4	7	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0004	1899	16	16	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0005	1899	12	0	5	0	1	6	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0006	1899	6	5	0	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0007	1899	5	5	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	c0008	1899	5	0	0	0	0	5	copy fasta	ZNF792	chr19	34951354	34969229