Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF79_chr9_127419382_127450372	0/0	c0009	1497	1	0	0	0	1	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0010	1497	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0011	1497	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	c0012	1497	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF7_chr8_144822560_144848772	1/0	c0001	2061	187	28	44	84	10	20	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/1	c0002	2061	116	21	22	44	6	22	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0003	2061	105	33	10	61	1	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0004	2061	12	2	5	4	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0005	2061	4	3	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0006	2061	4	3	1	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0007	2061	3	0	2	0	1	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0008	2061	2	0	0	2	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0009	2061	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0010	2061	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0011	2061	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0012	2061	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	c0013	2061	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF800_chr7_127365043_127397708	0/1	c0001	3521	212	50	46	76	8	31	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0002	3522	33	0	8	20	3	2	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	1/0	c0003	3522	28	13	9	4	0	1	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0004	3522	27	2	10	9	2	4	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0005	3520	10	0	0	10	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0006	3522	6	2	0	3	0	1	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0007	3521	4	4	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0008	3521	4	0	0	4	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0009	3522	4	4	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0010	3521	3	3	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0011	3520	3	0	0	3	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0012	3522	3	3	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0013	3523	2	2	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0014	3523	2	1	0	1	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0015	3523	2	0	0	2	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0016	3522	2	2	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0017	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0018	3522	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0019	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0020	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0021	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0022	3521	1	0	0	1	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0023	3521	1	0	0	1	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0024	3522	1	0	0	0	1	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0025	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0026	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0027	3521	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0028	3521	1	0	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	c0029	3521	1	0	0	0	0	1	copy fasta	ZNF800	chr7	127365043	127397708
ZNF804A_chr2_184593529_184944492	0/0	c0001	3633	45	4	19	12	5	5	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0002	3630	34	16	10	3	1	4	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0003	3630	30	28	2	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	c0004	3630	26	11	8	5	0	2	copy fasta	ZNF804A	chr2	184593529	184944492